Package: HospitalNetwork 0.9.3

HospitalNetwork: Building Networks of Hospitals Through Patients Transfers

Set of tools to help interested researchers to build hospital networks from data on hospitalized patients transferred between hospitals. Methods provided have been used in Donker T, Wallinga J, Grundmann H. (2010) <doi:10.1371/journal.pcbi.1000715>, and Nekkab N, Crépey P, Astagneau P, Opatowski L, Temime L. (2020) <doi:10.1038/s41598-020-71212-6>.

Authors:Pascal Crépey [aut, cre, cph], Tjibbe Donker [aut], Clément Massonnaud [aut], Michael Lydeamore [aut]

HospitalNetwork_0.9.3.tar.gz
HospitalNetwork_0.9.3.zip(r-4.5)HospitalNetwork_0.9.3.zip(r-4.4)HospitalNetwork_0.9.3.zip(r-4.3)
HospitalNetwork_0.9.3.tgz(r-4.4-any)HospitalNetwork_0.9.3.tgz(r-4.3-any)
HospitalNetwork_0.9.3.tar.gz(r-4.5-noble)HospitalNetwork_0.9.3.tar.gz(r-4.4-noble)
HospitalNetwork_0.9.3.tgz(r-4.4-emscripten)HospitalNetwork_0.9.3.tgz(r-4.3-emscripten)
HospitalNetwork.pdf |HospitalNetwork.html✨
HospitalNetwork/json (API)
NEWS

# Install 'HospitalNetwork' in R:

install.packages('HospitalNetwork', repos = c('https://pascalcrepey.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pascalcrepey/hospitalnetwork/issues

On CRAN:

hospital-networks patient-database patients-transfers

5.14 score 7 stars 13 scripts 197 downloads 12 exports 58 dependencies

Last updated 2 years agofrom:923bec40e0. Checks:OK: 5 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 29 2024
R-4.5-win	NOTE	Oct 29 2024
R-4.5-linux	NOTE	Oct 29 2024
R-4.4-win	OK	Oct 29 2024
R-4.4-mac	OK	Oct 29 2024
R-4.3-win	OK	Oct 29 2024
R-4.3-mac	OK	Oct 29 2024

Exports:all_admissions_summary checkBase create_fake_subjectDB create_fake_subjectDB_clustered create_subject_stay edgelist_from_base get_metrics HospiNet hospinet_from_subject_database matrix_from_base matrix_from_edgelist per_facility_summary

Dependencies:backports cachem checkmate cli colorspace cpp11 data.table dplyr fansi farver fastmap generics ggforce ggplot2 ggraph ggrepel glue graphlayouts gridExtra gtable igraph isoband labeling lattice lifecycle lubridate magrittr MASS Matrix memoise mgcv munsell nlme pillar pkgconfig polyclip purrr R6 RColorBrewer Rcpp RcppArmadillo RcppEigen rlang scales stringi stringr systemfonts tibble tidygraph tidyr tidyselect timechange tweenr utf8 vctrs viridis viridisLite withr

HospitalNetwork-Workflow

Rendered fromHospitalNetwork-Workflow.Rmdusingknitr::rmarkdownon Oct 29 2024.

Last update: 2023-02-25
Started: 2019-07-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check and fix overlapping admissions.	adjust_overlapping_stays
Summary statistics on entire database	all_admissions_summary
General check function	checkBase
Check database format	checkFormat
Create a fake subject database	create_fake_subjectDB
Create a fake subject database with clustering	create_fake_subjectDB_clustered
Create a fake subject stay	create_subject_stay
Compute the edgelist of a network from a database of movements records.	edgelist_from_base
Compute the betweenness centrality	get_betweenness
Compute closeness	get_closeness
Compute the clusters	get_clusters
Compute the degree of each nodes in the network	get_degree
Function computing hub scores of nodes by group	get_hubs_bycluster
Function computing hub scores for each node. If bycluster = TRUE, hub scores are computed by cluster	get_hubs_global
Function returning matrices of transfers within each by clusters	get_matrix_bycluster
Compute network metrics	get_metrics
Class providing the HospiNet object with its methods	HospiNet
Create HospiNet object from subject database	hospinet_from_subject_database
Compute the adjacency matrix of a network from a database of movements records.	matrix_from_base
Compute the adjacency matrix of a network from its edgelist	matrix_from_edgelist
Function that extracts summary statistics from entire database	per_facility_summary